Basic Information
Locus ID:
nbisL1-mrna-16489
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7559383 | 7563352 | - | nbisL1-mrna-16489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 45,916.27 Da | 50.84 | 70.81 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 1.21235E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 1.41935E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 2.46265E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 1.8E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 320 | 3.6E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 1.1E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 247 | 338 | 2.17E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 4.3E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 218 | 6.99E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 218 | 3.1E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 228 | 339 | 3.5E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 136 | 5.5E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 5.8E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 5.0E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 6.5E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.589928 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 17.011795 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.067479 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_022715311.1 | oligouridylate-binding protein 1B-like isoform X2 [Durio zibethinus] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF46 | Uncharacterized protein MANES_11G016600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology