Basic Information
Locus ID:
nbisL1-mrna-16484
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 310048 | 312002 | + | nbisL1-mrna-16484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 67,794.74 Da | 48.14 | 99.05 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 231 | 254 | 0.02 | IPR001611 |
| Pfam | PF12937 | F-box-like | 65 | 96 | 1.7E-5 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 470 | 492 | 1.4 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 206 | 229 | 1.5 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 57 | 99 | 9.94E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 185 | 300 | 1.57E-10 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 286 | 633 | 1.19E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 437 | 633 | 2.6E-30 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 57 | 101 | 4.2E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 147 | 436 | 4.7E-44 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 232 | 257 | 1.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 575 | 600 | 91.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 390 | 415 | 74.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 206 | 231 | 3.8E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 497 | 522 | 690.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 258 | 283 | 1.2E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 524 | 548 | 42.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 444 | 469 | 19.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 364 | 389 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 470 | 495 | 0.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 338 | 363 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 417 | 442 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 549 | 573 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 601 | 626 | 250.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_050271939.1 | EIN3-binding F-box protein 1-like [Quercus robur] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2N9GH54 | F-box domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26747 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology