Basic Information
Locus ID:
nbisL1-mrna-16444
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000132F_pilon | 4197356 | 4206382 | - | nbisL1-mrna-16444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 86,374.96 Da | 38.94 | 104.46 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01408 | Oxidoreductase family, NAD-binding Rossmann fold | 6 | 105 | 3.4E-6 | IPR000683 |
| Pfam | PF00083 | Sugar (and other) transporter | 500 | 551 | 1.0E-9 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 312 | 738 | 2.62E-35 | IPR036259 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 159 | 1.5E-13 | IPR036291 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 423 | 747 | 1.5E-35 | IPR036259 |
| Gene3D | G3DSA:3.40.50.720 | - | 7 | 133 | 9.4E-21 | - |
| Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 134 | 180 | 9.4E-21 | - |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 324 | 395 | 3.3E-9 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 327 | 791 | 12.313287 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 677 | 694 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_034916799.1 | organic cation/carnitine transporter 7 isoform X1 [Populus alba] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MJ65 | MFS domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology