Basic Information
Locus ID:
nbisL1-mrna-16440
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the universal ribosomal protein uS5 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000649F_pilon | 61687 | 66489 | + | nbisL1-mrna-16440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 53,445.84 Da | 46.93 | 71.28 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03719 | Ribosomal protein S5, C-terminal domain | 407 | 430 | 7.7E-5 | IPR005324 |
| Pfam | PF00333 | Ribosomal protein S5, N-terminal domain | 325 | 389 | 1.2E-16 | IPR013810 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 320 | 390 | 2.09E-15 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 275 | 386 | 1.5E-16 | - |
| ProSiteProfiles | PS50881 | S5 double stranded RNA-binding domain profile. | 325 | 388 | 15.500193 | IPR013810 |
| Coils | Coil | Coil | 62 | 89 | - | - |
| Coils | Coil | Coil | 295 | 318 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64880.1 | Ribosomal protein S5 family protein. | 0 |
| RefSeq | XP_002524031.2 | uncharacterized protein LOC8284289 [Ricinus communis] | 0 |
| Q30TU7 | Small ribosomal subunit protein uS5 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) OX=326298 GN=rpsE PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2JGB0 | 30S ribosomal protein S5 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2699 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19431 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000407 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119050 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30695, Sbi_jg58578 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28447 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005002 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55051, Sgl60303 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006253, gene:ENSEOMG00000021417 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024600, CQ.Regalona.r1.5BG0026050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30247330 |
| Apiaceae | Apium graveolens | 1 | Ag4G02774 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G011000, COCNU_10G008140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720772 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1759.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G07291 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G64880.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002490m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g19120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g054350.2N |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G1874, Cgl09G1901 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g02390, gene.Cymno10g05340 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0942s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g25480, gene.Thate08g04520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1860 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032381 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08836, Lb5G28779 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3940, BH01.4337, CH01.4570 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0098560, gene-QOZ80_2BG0152030 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019367 |
| Poaceae | Oryza coarctata | 2 | Oco03G000120, Oco04G000150 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g01230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G003000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0200540, Pt_Chr0200544, Pt_Chr0703049 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G010640, Chr0G010950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G902200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG072890, gene_TRIDC7BG068970 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G519600.1, TraesCS7B02G435700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229290_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52299 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14794 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2374, evm.TU.LG14.1543 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g05120, gene.Posoc06g20840 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1720 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3462 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14386 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13957 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.260 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005837 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12769 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16440 |
| Salicaceae | Populus euphratica | 4 | populus_peu16260, populus_peu16261, populus_peu16269 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613856 |
| Solanaceae | Solanum chilense | 1 | SOLCI006089400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004881 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6175 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0058 |
| Zosteraceae | Zostera marina | 1 | Zosma02g23480.v3.1 |