Basic Information
Locus ID:
nbisL1-mrna-16421
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 8655832 | 8661949 | + | nbisL1-mrna-16421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 82,355.11 Da | 50.86 | 73.57 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 69 | 224 | 2.4286E-28 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 31 | 374 | 2.1E-107 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 440 | 510 | 2.2E-6 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 100 | 174 | 5.5E-8 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 377 | 435 | 8.9E-10 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 377 | 503 | 5.3E-36 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 28 | 223 | 1.59E-47 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 227 | 374 | 1.41E-61 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 377 | 492 | 2.9E-26 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 62 | 218 | 1.9E-151 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 31 | 372 | 1.9E-151 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 577 | - | - |
| Coils | Coil | Coil | 51 | 71 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021629091.1 | nuclear poly(A) polymerase 4 isoform X1 [Manihot esculenta] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MJH0 | polynucleotide adenylyltransferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology