Basic Information
Locus ID:
nbisL1-mrna-16417
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Origin recognition complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000132F_pilon | 4035353 | 4040007 | + | nbisL1-mrna-16417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 97,000.73 Da | 52.37 | 76.06 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 507 | 652 | 2.1E-20 | IPR003959 |
| Pfam | PF01426 | BAH domain | 286 | 375 | 2.3E-11 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 206 | 251 | 1.1E-9 | IPR019787 |
| Pfam | PF17872 | AAA lid domain | 680 | 714 | 1.7E-10 | IPR041083 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 192 | 255 | 3.99E-15 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 472 | 715 | 1.32E-34 | IPR027417 |
| Gene3D | G3DSA:2.30.30.490 | - | 144 | 392 | 1.0E-30 | IPR043151 |
| Gene3D | G3DSA:1.10.8.60 | - | 655 | 747 | 6.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 269 | 8.6E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 458 | 654 | 1.7E-62 | IPR027417 |
| SMART | SM00382 | AAA_5 | 502 | 656 | 2.5E-7 | IPR003593 |
| SMART | SM00249 | PHD_3 | 205 | 250 | 7.6E-9 | IPR001965 |
| SMART | SM00439 | BAH_4 | 177 | 378 | 2.4E-11 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 203 | 252 | 9.9083 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 250 | 378 | 18.509727 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 206 | 249 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 147 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12620.1 | origin of replication complex 1B. Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime. | 0 |
| RefSeq | XP_021645465.1 | origin of replication complex subunit 1A-like [Hevea brasiliensis] | 0 |
| Q9SU24 | Origin of replication complex subunit 1B OS=Arabidopsis thaliana OX=3702 GN=ORC1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JRC8 | Origin recognition complex subunit 1 OS=Jatropha curcas OX=180498 GN=JCGZ_25915 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8564 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11642 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004979 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17982, Sbi_jg61068, Sbi_jg61069, Sbi_jg62605 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1187, Seu_jg22822 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014432 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23864, Sgl25026, Sgl29035, Sgl30166 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008680, gene:ENSEOMG00000009062 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001390, CQ.Regalona.r1.4BG0001470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052930 |
| Apiaceae | Apium graveolens | 1 | Ag1G00759 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G004340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715915 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2200.V1.1, AsparagusV1_08.1022.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G17122 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G12620.1, AT4G14700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029404m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04850.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g048440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1916 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2392, Cgl05G1916 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g13690 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0095s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04590 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2419 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.246 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014838, Pov_00017121 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14292 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.585, BH06.639, CH06.652 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511740, gene-QOZ80_6BG0463650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0659760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028144 |
| Poaceae | Oryza coarctata | 2 | Oco11G004080, Oco12G004090 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g08790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G068600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0405206 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G021270, Chr14G002990, Chr21G002210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G308600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG018650, gene_TRIDC7BG008130 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G151700.1, TraesCS7B02G055600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb278360_P002, Zm00001eb374440_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4979 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29247 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG22.636, evm.TU.LG25.643 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g11660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1053 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29966 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3547 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16417 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.637 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015880 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4537 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20746 |
| Salicaceae | Populus euphratica | 1 | populus_peu35886 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617372, gene-LOC132626529 |
| Solanaceae | Solanum chilense | 1 | SOLCI003341300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014942 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5542 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2090 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08950.v3.1 |