Basic Information
Locus ID:
nbisL1-mrna-16394
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 14359991 | 14364255 | + | nbisL1-mrna-16394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 107,371.74 Da | 31.80 | 107.18 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 266 | 325 | 1.6E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 531 | 590 | 1.1E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 242 | 264 | 1.4 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 699 | 973 | 6.7E-42 | IPR001245 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 145 | 184 | 4.1E-6 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 68 | 2.3E-6 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 692 | 973 | 1.64E-71 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 384 | 619 | 2.72E-48 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 75 | 422 | 2.9E-66 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 142 | 3.4E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 332 | 627 | 7.7E-84 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 775 | 980 | 1.6E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 663 | 774 | 1.1E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 143 | 229 | 2.1E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 230 | 331 | 2.4E-28 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 288 | 312 | 62.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 118 | 142 | 190.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 698 | 973 | 2.6E-29 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 240 | 264 | 94.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 336 | 360 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 481 | 505 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 191 | 215 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 577 | 600 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 100.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 698 | 974 | 36.979504 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 819 | 831 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_002510557.3 | - | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2JCU4 | Non-specific serine/threonine protein kinase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology