Basic Information
Locus ID:
nbisL1-mrna-16366
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Integrator complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000132F_pilon | 3765757 | 3767249 | + | nbisL1-mrna-16366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 56,022.34 Da | 37.91 | 114.70 | 0.22 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14590.1 | embryo defective 2739. | 0 |
| RefSeq | XP_034923311.1 | integrator complex subunit 3 homolog [Populus alba] | 0 |
| Q7TPD0 | Integrator complex subunit 3 OS=Mus musculus OX=10090 GN=Ints3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2QN90 | Integrator complex subunit 3 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15626, jg4026 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_11594, gene_5093, gene_5095, gene_9976 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005060 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17843, Sbi_jg62468 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1042 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007191, GOSA_00007198 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59164 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000028608, gene:ENSEOMG00000029681 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0002090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30051110 |
| Apiaceae | Apium graveolens | 1 | Ag1G01028 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006700 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714943, gene-LOC120103817 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.728.V1.1, AsparagusV1_09.1319.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21228 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G14590.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017599m.g.v1.0, Thhalv10027440m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g021850.2N, BniB08g074420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0935 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0934 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05730 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08510 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-396 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.151 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.422, BH04.454, CH04.447 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671340, gene-QOZ80_9BG0694820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349060.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064719 |
| Poaceae | Oryza coarctata | 2 | Oco21G002170, Oco22G003000 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g07030.1, LOC_Os11g40750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G078100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G020590, Chr16G010160, Chr17G009250, Chr31G001630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G176100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032800, gene_TRIDC4BG017020 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G206300.1.cds1, TraesCS4D02G107300.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb091720_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27144 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18472 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2469, evm.TU.LG17.1513 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g19850, gene.Posoc05g19860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1002 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19605, nbisL1-mrna-30014 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3511 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16366 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.255 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015263 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4501 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20793 |
| Salicaceae | Populus euphratica | 1 | populus_peu01765 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132601549 |
| Solanaceae | Solanum chilense | 1 | SOLCI002970700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021634 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6559 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1477 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11590.v3.1 |