Basic Information
Locus ID:
nbisL1-mrna-1633
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 8743290 | 8745212 | + | nbisL1-mrna-1633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 51,419.60 Da | 51.18 | 79.70 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 103 | 421 | 1.6E-84 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 72 | 457 | 1.43E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 63 | 456 | 6.7E-114 | IPR012334 |
| SMART | SM00710 | pbh1 | 235 | 261 | 230.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 344 | 365 | 6300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 212 | 234 | 4400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 315 | 336 | 7.1 | IPR006626 |
| SMART | SM00710 | pbh1 | 262 | 283 | 4300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 285 | 305 | 6700.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 292 | 305 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 59 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_034904120.1 | polygalacturonase At1g48100-like [Populus alba] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A836DMH9 | Polygalacturonase OS=Salix suchowensis OX=1278906 GN=IMY05_014G0092900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology