Basic Information
Locus ID:
nbisL1-mrna-16325
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
LRR repeats and ubiquitin-like domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000132F_pilon | 3544674 | 3547116 | + | nbisL1-mrna-16325 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 41,359.28 Da | 38.82 | 102.48 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 193 | 235 | 4.0E-7 | IPR001611 |
| Pfam | PF00240 | Ubiquitin family | 11 | 79 | 9.8E-17 | IPR000626 |
| Pfam | PF13855 | Leucine rich repeat | 270 | 328 | 2.9E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 123 | 330 | 3.85E-41 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 79 | 9.69E-20 | IPR029071 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 91 | 357 | 7.1E-50 | IPR032675 |
| Gene3D | G3DSA:3.10.20.90 | - | 3 | 81 | 3.5E-22 | - |
| SMART | SM00364 | LRR_bac_2 | 199 | 218 | 28.0 | - |
| SMART | SM00364 | LRR_bac_2 | 291 | 310 | 94.0 | - |
| SMART | SM00213 | ubq_7 | 9 | 79 | 9.9E-17 | IPR000626 |
| SMART | SM00364 | LRR_bac_2 | 270 | 287 | 250.0 | - |
| SMART | SM00369 | LRR_typ_2 | 245 | 268 | 0.49 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 269 | 290 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 222 | 244 | 5.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 199 | 221 | 1.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 314 | 5.2 | IPR003591 |
| SMART | SM00364 | LRR_bac_2 | 222 | 241 | 21.0 | - |
| SMART | SM00364 | LRR_bac_2 | 245 | 264 | 62.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 201 | 223 | 7.296117 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 224 | 245 | 7.927575 | IPR001611 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 9 | 77 | 16.602951 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30105.1 | 0 | |
| RefSeq | XP_021601754.1 | LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Manihot esculenta] | 0 |
| P0C895 | LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana OX=3702 GN=At2g30105 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KB91 | LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8381 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5970 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028165 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175350 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26853, Sbi_jg33719 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8408 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003051 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73121, Sgl76668 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004611, gene:ENSEOMG00000038020 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0001560, CQ.Regalona.r1.9BG0004140 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30061010, pistato.v30061020, pistato.v30061040 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01834 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G013570 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710343 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.579.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G05397 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30105.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016813m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g12670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014010.2N, BniB06g028120.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1835 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1893 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18360 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0613s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g02810 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1050 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025548 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14804 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2020, BH01.2198, CH01.2291 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0126620, gene-QOZ80_2BG0182230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0039370.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011316 |
| Poaceae | Oryza coarctata | 1 | Oco19G005250 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g31790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G216600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502480, Pt_Chr0502506 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013570, Chr15G016120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G264700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG021430, gene_TRIDC1BG026100 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G142500.1, TraesCS1B02G159200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046860_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48125 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16135 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1652, evm.TU.LG26.15 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.958 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30056 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15688 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16325 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.569 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015488 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4474 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20829 |
| Salicaceae | Populus euphratica | 1 | populus_peu01725 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605790, gene-LOC132605791 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021238 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2614 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0016 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13660.v3.1 |