Basic Information
Locus ID:
nbisL1-mrna-1632
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 7173546 | 7174883 | + | nbisL1-mrna-1632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 49,931.62 Da | 45.97 | 94.20 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 77 | 1.46098E-24 | - |
| Pfam | PF04564 | U-box domain | 31 | 103 | 6.5E-23 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 140 | 423 | 7.68E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 107 | 2.08E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 127 | 425 | 6.6E-14 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 108 | 4.9E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 34 | 97 | 3.0E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 104 | 41.25811 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021634714.1 | U-box domain-containing protein 21 [Manihot esculenta] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9UML0 | RING-type E3 ubiquitin transferase OS=Manihot esculenta OX=3983 GN=MANES_14G172900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology