Basic Information
Locus ID:
nbisL1-mrna-16309
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 10688859 | 10693930 | - | nbisL1-mrna-16309 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 92,814.92 Da | 61.31 | 64.20 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 758 | 798 | 2.06618E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 756 | 803 | 1.8E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 758 | 804 | 1.45E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 742 | 809 | 1.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 759 | 798 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 156 | - | - |
| Coils | Coil | Coil | 688 | 708 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021659180.1 | uncharacterized protein LOC110649078 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A8T2XX18 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_019890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology