Basic Information
Locus ID:
nbisL1-mrna-16308
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000650F_pilon | 1327790 | 1329014 | + | nbisL1-mrna-16308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 41,735.98 Da | 36.29 | 83.42 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 33 | 166 | 1.14959E-22 | IPR001480 |
| Pfam | PF01453 | D-mannose binding lectin | 83 | 191 | 1.9E-27 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 289 | 350 | 9.9E-7 | IPR003609 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 81 | 193 | 2.75E-20 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 20 | 163 | 8.3E-15 | IPR036426 |
| SMART | SM00108 | blect_4 | 32 | 166 | 7.7E-23 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 26 | 159 | 12.389524 | IPR001480 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18470.1 | Curculin-like (mannose-binding) lectin family protein. | 0 |
| RefSeq | XP_048235945.1 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Ricinus communis] | 0 |
| Q9LW83 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana OX=3702 GN=CES101 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2C9VAX0 | Bulb-type lectin domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_09G146400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg18161, jg18162, jg18163, jg18164, jg18165, jg23599 |
| Anacardiaceae | Pistacia vera | 10 | pistato.v30014320, pistato.v30036750, pistato.v30036760 ... |
| Apiaceae | Apium graveolens | 1 | AgUnG01050 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18470.1 |
| Brassicaceae | Brassica nigra | 3 | BniB05g045300.2N, BniB08g009250.2N, BniB08g009270.2N |
| Plantaginaceae | Plantago ovata | 4 | Pov_00016931, Pov_00029256, Pov_00029257, Pov_00041214 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1374, evm.TU.LG02.1375, evm.TU.LG09.595 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.347, evm.TU.Scaffold_8_RagTag.280 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3277 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3165 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13833 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21937 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16308 |
| Salicaceae | Populus euphratica | 5 | populus_peu00251, populus_peu00252, populus_peu00253 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635386, gene-LOC132637212 |