Basic Information
Locus ID:
nbisL1-mrna-16284
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
(NAC) domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 11622991 | 11631008 | - | nbisL1-mrna-16284 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 106,550.45 Da | 44.18 | 74.23 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 104 | 150 | 1.15376E-13 | - |
| Pfam | PF02365 | No apical meristem (NAM) protein | 351 | 481 | 2.4E-38 | IPR003441 |
| Pfam | PF12906 | RING-variant domain | 104 | 149 | 3.9E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 100 | 152 | 1.62E-11 | - |
| SUPERFAMILY | SSF101941 | NAC domain | 346 | 505 | 3.66E-62 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 359 | 510 | 7.3E-56 | IPR036093 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 156 | 1.8E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 103 | 150 | 2.7E-15 | IPR011016 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 350 | 505 | 58.360359 | IPR003441 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 96 | 156 | 19.53298 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 344 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33060.1 | NAC 014. | 0 |
| RefSeq | XP_048229964.1 | protein NTM1-like 9 [Ricinus communis] | 0 |
| B5X570 | NAC domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=NAC014 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KC75 | Uncharacterized protein LOC105645554 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg22516, jg37419, jg5025 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30132920 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G03740 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G33060.2, AT4G35580.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007021m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g28600.v2.2, Sp2g04660.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g035920.2N, BniB04g049740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0684 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0775 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11635 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003096, Pov_00041670 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.12, evm.TU.Scaffold_16_RagTag.7 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18400, nbisL1-mrna-22245, nbisL1-mrna-22262 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13325, nbisL1-mrna-3220 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20460, nbisL1-mrna-8707 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.395, evm.TU.utg000022l.490 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014428, Maker00018351 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16284, nbisL1-mrna-3633 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10516, nbisL1-mrna-6831 |
| Salicaceae | Populus euphratica | 2 | populus_peu00195, populus_peu17262 |