Basic Information
Locus ID:
nbisL1-mrna-1625
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
ubiquitin protein ligase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 4341094 | 4352091 | - | nbisL1-mrna-1625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 135,703.97 Da | 47.60 | 80.64 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 116 | 242 | 5.98847E-34 | - |
| CDD | cd12108 | Hr-like | 357 | 483 | 9.58703E-18 | - |
| CDD | cd12108 | Hr-like | 699 | 859 | 1.28577E-26 | - |
| Pfam | PF14599 | Zinc-ribbon | 1135 | 1191 | 5.4E-22 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 1077 | 1110 | 1.7E-7 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 697 | 860 | 4.2E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 121 | 244 | 1.5E-11 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1070 | 1112 | 2.35E-11 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 112 | 261 | 9.6E-31 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 692 | 925 | 1.9E-24 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 356 | 493 | 1.5E-12 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1158 | 1201 | 3.2E-17 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1070 | 1137 | 15.12628 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 75 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021653202.1 | zinc finger protein BRUTUS-like isoform X1 [Hevea brasiliensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1Y9C2 | Zinc finger protein BRUTUS-like At1g18910 OS=Populus trichocarpa OX=3694 GN=POPTR_012G055100 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology