Basic Information
Locus ID:
nbisL1-mrna-16248
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000650F_pilon | 978994 | 981673 | + | nbisL1-mrna-16248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 27,270.77 Da | 28.93 | 67.61 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 19 | 242 | 1.3E-84 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 129 | 232 | 1.28E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 128 | 245 | 2.7E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 133 | 233 | 24.846338 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_002319075.1 | auxin-responsive protein IAA16 [Populus trichocarpa] | 0 |
| O24407 | Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JUW0 | Auxin-responsive protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology