Basic Information
Locus ID:
nbisL1-mrna-16215
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 12042296 | 12045029 | + | nbisL1-mrna-16215 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 51,635.58 Da | 46.53 | 72.99 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 118 | 431 | 2.4E-82 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 82 | 466 | 1.14E-124 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 77 | 467 | 4.1E-116 | IPR012334 |
| SMART | SM00710 | pbh1 | 325 | 346 | 11.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 354 | 375 | 4700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 222 | 271 | 860.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 302 | 315 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 49 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_002519290.1 | polygalacturonase At1g48100 [Ricinus communis] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835K1P4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology