Basic Information
Locus ID:
nbisL1-mrna-16201
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000132F_pilon | 2815877 | 2821257 | - | nbisL1-mrna-16201 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 72,408.24 Da | 46.48 | 96.11 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 5.45663E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 467 | 505 | 9.8E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 257 | 327 | 3.7E-21 | IPR003613 |
| Pfam | PF05536 | Neurochondrin | 520 | 645 | 1.5E-5 | IPR008709 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 384 | 423 | 8.5E-10 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 636 | 7.92E-51 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 253 | 333 | 2.78E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 333 | 659 | 4.8E-57 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 330 | 5.2E-31 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 118 | 3.0E-8 | IPR036537 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 6.7E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 548 | 588 | 24.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 384 | 424 | 2.8E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 0.86 | IPR000225 |
| SMART | SM00185 | arm_5 | 507 | 547 | 26.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 425 | 465 | 0.2 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 518 | 560 | 9.2224 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 45.1856 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 12.0224 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 664 | - | - |
| Coils | Coil | Coil | 621 | 641 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_012065019.1 | U-box domain-containing protein 13 [Jatropha curcas] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LYH9 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology