Basic Information
Locus ID:
nbisL1-mrna-16163
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 11540860 | 11543032 | - | nbisL1-mrna-16163 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 51,477.19 Da | 49.13 | 58.96 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 417 | 448 | 4.5E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 316 | 400 | 9.1E-20 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 316 | 401 | 1.4E-29 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 204 | - | - |
| Coils | Coil | Coil | 354 | 381 | - | - |
| Coils | Coil | Coil | 315 | 342 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_002519215.1 | uncharacterized protein LOC8258805 [Ricinus communis] | 0 |
| TrEMBL | A0A2P2KQ66 | Protein binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology