Basic Information
Locus ID:
nbisL1-mrna-16162
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
UBC32
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 11538028 | 11540202 | + | nbisL1-mrna-16162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 34,123.05 Da | 43.43 | 77.06 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 13 | 148 | 1.15189E-45 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 15 | 126 | 3.7E-20 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 12 | 135 | 1.44E-37 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 178 | 7.4E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 14 | 174 | 1.4E-27 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 11 | 162 | 37.62952 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 208 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17000.1 | ubiquitin-conjugating enzyme 32. | 0 |
| RefSeq | XP_002314941.1 | - | 0 |
| Q9LSP7 | Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana OX=3702 GN=UBC32 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LU13 | Non-canonical ubiquitin conjugating enzyme OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11268, jg28102, jg5639 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2956 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019088 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g053960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38023, Sbi_jg6166 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15680 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006209 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl00721, Sgl00844, Sgl05743 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001164, gene:ENSEOMG00000031601 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0001410, CQ.Regalona.r1.3BG0001460 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30148730, pistato.v30148760, pistato.v30233240 |
| Apiaceae | Apium graveolens | 2 | Ag1G02002, Ag8G01774 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G004520 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103723397, gene-LOC120108985, gene-LOC120112886 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.170.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA13379 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G17000.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10021196m.g.v1.0, Thhalv10025677m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g15220.v2.2, Sp7g14760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g020130.2N, BniB07g052950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1052 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1142 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g02460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0023s00034.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g09730 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1204 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026031 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01705, Lb1G03018 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3874, BH01.4212, CH01.4499 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0245670, gene-QOZ80_3BG0282470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0382110.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068466 |
| Poaceae | Oryza coarctata | 2 | Oco05G011600, Oco06G014800 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g19500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G377300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102573, Pt_Chr0102574 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032930, Chr04G009590, Chr07G002140, Chr12G006650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G329200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG017080, gene_TRIDC4BG031710 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G121400.1, TraesCS4B02G181500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb014740_P001, Zm00001eb396060_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1840, nbis-gene-3514 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1370, Zma_g3767 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1341 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g07210 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.650, evm.TU.Scaffold_6_RagTag.1181 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1324, nbisL1-mrna-16162 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13253, nbisL1-mrna-18442 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1016 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.754, evm.TU.utg000019l.824 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00008119, Maker00012737 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13548, nbisL1-mrna-5290 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13086, nbisL1-mrna-4071 |
| Salicaceae | Populus euphratica | 2 | populus_peu06905, populus_peu20841 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604501 |
| Solanaceae | Solanum chilense | 1 | SOLCI001643200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007634 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6892_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2077 |
| Zosteraceae | Zostera marina | 1 | Zosma06g21720.v3.1 |