Basic Information
Locus ID:
nbisL1-mrna-1615
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 8916718 | 8919864 | + | nbisL1-mrna-1615 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 64,473.78 Da | 54.70 | 58.31 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 427 | 512 | 3.6E-20 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 529 | 559 | 7.4E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 427 | 512 | 9.8E-33 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 215 | - | - |
| Coils | Coil | Coil | 465 | 486 | - | - |
| Coils | Coil | Coil | 433 | 453 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_012082909.1 | uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas] | 0 |
| TrEMBL | A0A2P2JCK1 | Uncharacterized protein LOC105642632 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology