Basic Information
Locus ID:
nbisL1-mrna-16141
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 11390085 | 11395289 | - | nbisL1-mrna-16141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 58,233.88 Da | 54.43 | 82.81 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 336 | 513 | 4.45726E-116 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 6 | 99 | 4.6E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 335 | 442 | 9.1E-19 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 338 | 468 | 2.75E-19 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 3 | 123 | 2.4E-33 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 322 | 513 | 4.1E-73 | - |
| SMART | SM00232 | pad1_6 | 338 | 466 | 7.0E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 339 | 469 | 30.796223 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 332 | - | - |
| Coils | Coil | Coil | 86 | 106 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_050239844.1 | AMSH-like ubiquitin thioesterase 3 [Quercus robur] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MGE3 | MPN domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology