Basic Information
Locus ID:
nbisL1-mrna-16135
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000650F_pilon | 324405 | 334071 | - | nbisL1-mrna-16135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 124,444.15 Da | 39.85 | 82.59 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 479 | 0.035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 909 | 942 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 484 | 947 | 3.06E-38 | IPR011047 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 912 | 1095 | 7.06E-14 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 326 | 557 | 1.04E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 963 | 1101 | 5.0E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 751 | 962 | 3.0E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 536 | 700 | 5.1E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 273 | 533 | 1.7E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 438 | 479 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 612 | 0.63 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.7E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 860 | 900 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 821 | 857 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 903 | 942 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 525 | 568 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 330 | 371 | 0.62 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1052 | 1089 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 481 | 522 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 993 | 1034 | 220.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 0.0014 | IPR006594 |
| SMART | SM00320 | WD40_4 | 392 | 432 | 6.5 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.501994 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.614444 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 910 | 945 | 8.940149 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 590 | 621 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 910 | 951 | 11.143396 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1128 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_037496627.1 | - | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MSJ5 | Topless-related protein 3 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology