Basic Information
Locus ID:
nbisL1-mrna-16110
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 11166899 | 11171392 | + | nbisL1-mrna-16110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 33,878.83 Da | 67.35 | 68.52 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 114 | 157 | 1.59652E-19 | - |
| Pfam | PF13639 | Ring finger domain | 114 | 157 | 1.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 164 | 1.2E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 163 | 6.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 115 | 156 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 115 | 157 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 270 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_021634984.1 | RING-H2 finger protein ATL2-like [Hevea brasiliensis] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2PKJ5 | Uncharacterized protein MANES_15G010700 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology