Basic Information
Locus ID:
nbisL1-mrna-16087
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
SOC1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 9251256 | 9252993 | + | nbisL1-mrna-16087 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 17,903.49 Da | 51.67 | 84.01 | -1.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01486 | K-box region | 25 | 111 | 5.7E-27 | IPR002487 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 26 | 116 | 15.140508 | IPR002487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 133 | - | - |
| Coils | Coil | Coil | 60 | 109 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_012087038.1 | agamous-like MADS-box protein AGL19 isoform X2 [Jatropha curcas] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | B9RBZ7 | Mads box protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1682640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology