Basic Information
Locus ID:
nbisL1-mrna-16049
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 10646840 | 10649792 | - | nbisL1-mrna-16049 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 34,193.81 Da | 52.91 | 54.26 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 182 | 224 | 6.7E-6 | IPR018957 |
| Pfam | PF05495 | CHY zinc finger | 47 | 127 | 3.0E-21 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 229 | 287 | 1.4E-27 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 231 | 4.59E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 118 | 175 | 1.31E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 44 | 116 | 6.93E-19 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 255 | 291 | 2.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 254 | 3.5E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 182 | 224 | 4.7E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 117 | 181 | 33.638901 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 182 | 225 | 11.294285 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 40 | 115 | 25.200506 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_008223109.1 | - | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LGU1 | E3 ubiquitin-protein ligase MIEL1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology