Basic Information
Locus ID:
nbisL1-mrna-16036
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 10535304 | 10539066 | + | nbisL1-mrna-16036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 47,207.88 Da | 62.81 | 86.99 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 229 | 276 | 1.78056E-14 | - |
| Pfam | PF12906 | RING-variant domain | 229 | 275 | 8.0E-13 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 279 | 8.64E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 215 | 284 | 6.9E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 228 | 276 | 1.2E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 221 | 282 | 21.475323 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 96 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034898744.1 | uncharacterized protein LOC118036980 isoform X2 [Populus alba] | 0 |
| TrEMBL | A0A2P2JWT3 | Uncharacterized protein LOC8262371 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology