Basic Information
Locus ID:
nbisL1-mrna-16000
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 8461553 | 8466598 | + | nbisL1-mrna-16000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 92,348.41 Da | 41.59 | 85.19 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 543 | 676 | 1.04332E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 545 | 675 | 3.1E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 699 | 739 | 1.4E-9 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 505 | 745 | 7.89E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 504 | 790 | 3.1E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 677 | 783 | 3.1E-94 | - |
| SMART | SM00382 | AAA_5 | 541 | 678 | 5.2E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 648 | 667 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 466 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021679373.1 | transitional endoplasmic reticulum ATPase homolog 2-like isoform X5 [Hevea brasiliensis] | 0 |
| Q7ZZ25 | Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1a PE=2 SV=2 | 0 | |
| TrEMBL | A0A2N9GU64 | AAA domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31017 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology