Basic Information
Locus ID:
nbisL1-mrna-15983
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 8305830 | 8314034 | - | nbisL1-mrna-15983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 306,041.75 Da | 43.30 | 96.65 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07765 | KIP1-like protein | 14 | 84 | 7.0E-21 | IPR011684 |
| SUPERFAMILY | SSF57997 | Tropomyosin | 234 | 455 | 2.94E-9 | - |
| Gene3D | G3DSA:1.10.287.1490 | - | 335 | 481 | 2.6E-5 | - |
| ProSiteProfiles | PS51774 | Networked (NET) actin-binding (NAB) domain profile. | 10 | 90 | 33.625816 | IPR011684 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 128 | - | - |
| Coils | Coil | Coil | 1506 | 1533 | - | - |
| Coils | Coil | Coil | 1732 | 1759 | - | - |
| Coils | Coil | Coil | 976 | 1003 | - | - |
| Coils | Coil | Coil | 1651 | 1685 | - | - |
| Coils | Coil | Coil | 2353 | 2373 | - | - |
| Coils | Coil | Coil | 485 | 519 | - | - |
| Coils | Coil | Coil | 2124 | 2144 | - | - |
| Coils | Coil | Coil | 902 | 929 | - | - |
| Coils | Coil | Coil | 870 | 897 | - | - |
| Coils | Coil | Coil | 2018 | 2105 | - | - |
| Coils | Coil | Coil | 243 | 263 | - | - |
| Coils | Coil | Coil | 2589 | 2623 | - | - |
| Coils | Coil | Coil | 1912 | 1939 | - | - |
| Coils | Coil | Coil | 1188 | 1215 | - | - |
| Coils | Coil | Coil | 552 | 579 | - | - |
| Coils | Coil | Coil | 1700 | 1727 | - | - |
| Coils | Coil | Coil | 1538 | 1565 | - | - |
| Coils | Coil | Coil | 2547 | 2574 | - | - |
| Coils | Coil | Coil | 376 | 459 | - | - |
| Coils | Coil | Coil | 796 | 837 | - | - |
| Coils | Coil | Coil | 1008 | 1063 | - | - |
| Coils | Coil | Coil | 1838 | 1879 | - | - |
| Coils | Coil | Coil | 271 | 340 | - | - |
| Coils | Coil | Coil | 1220 | 1275 | - | - |
| Coils | Coil | Coil | 2381 | 2440 | - | - |
| Coils | Coil | Coil | 637 | 717 | - | - |
| Coils | Coil | Coil | 1326 | 1353 | - | - |
| Coils | Coil | Coil | 145 | 165 | - | - |
| Coils | Coil | Coil | 2458 | 2478 | - | - |
| Coils | Coil | Coil | 173 | 207 | - | - |
| Coils | Coil | Coil | 2293 | 2334 | - | - |
| Coils | Coil | Coil | 764 | 791 | - | - |
| Coils | Coil | Coil | 1400 | 1427 | - | - |
| Coils | Coil | Coil | 2156 | 2260 | - | - |
| Coils | Coil | Coil | 1612 | 1639 | - | - |
| Coils | Coil | Coil | 1944 | 1978 | - | - |
| Coils | Coil | Coil | 1114 | 1141 | - | - |
| Coils | Coil | Coil | 1806 | 1833 | - | - |
| Coils | Coil | Coil | 1432 | 1459 | - | - |
| Coils | Coil | Coil | 1082 | 1109 | - | - |
| Coils | Coil | Coil | 1294 | 1321 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41790.1 | COP1-interactive protein 1. encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light. | 0 |
| RefSeq | XP_043816600.1 | COP1-interactive protein 1-like [Manihot esculenta] | 0 |
| F4JZY1 | COP1-interactive protein 1 OS=Arabidopsis thaliana OX=3702 GN=CIP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MSI3 | Uncharacterized protein MANES_02G012600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg23535, jg37040, jg4738, jg4739, jg7681 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1777 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004490 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g099300, BVRB_5g099310 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg23998, Sbi_jg23999, Sbi_jg7827, Sbi_jg7828 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12204, Seu_jg12205 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001088, GOSA_00001089 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl52162, Sgl52163, Sgl57432, Sgl57435 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004097, gene:ENSEOMG00000005494 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0006170, CQ.Regalona.r1.5AG0006180 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30134800 |
| Apiaceae | Apium graveolens | 3 | Ag11G05075, Ag6G01681, Ag7G00643 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G22822, Ftri14G09583, Ftri2G05629, Ftri3G14520 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G64320.1, AT1G64330.1, AT5G41780.1, AT5G41790.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10023387m.g.v1.0, Thhalv10024082m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g00430.v2.2, Sp2g00440.v2.2, Sp7g00300.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g024410.2N, BniB04g022750.2N, BniB04g022760.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0194 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0220, Cgl03G0243 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17960 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2124, nbisL1-mrna-2125 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.1507, evm.TU.LG10.1508 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00005338, Pov_00028436, Pov_00028437, Pov_00028438 ... |
| Plumbaginaceae | Limonium bicolor | 5 | Lb2G08262, Lb2G08265, Lb2G08266, Lb4G24244, Lb4G24245 |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.Contig36.2, evm.TU.Contig40.1, evm.TU.LG04.3291 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_14_RagTag.125, evm.TU.Scaffold_14_RagTag.127 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18284, nbisL1-mrna-18285 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-2884, nbisL1-mrna-2885, nbisL1-mrna-4387 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20379, nbisL1-mrna-8607, nbisL1-mrna-8608 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000007l.170, add.evm.TU.utg000022l.241 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014226, Maker00018400 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15983, nbisL1-mrna-23201, nbisL1-mrna-3572 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10971, nbisL1-mrna-10973, nbisL1-mrna-6742 |
| Salicaceae | Populus euphratica | 8 | populus_peu03658, populus_peu03660, populus_peu34507 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602431, gene-LOC132608775, gene-LOC132634814 |
| Solanaceae | Solanum chilense | 3 | SOLCI002865100, SOLCI004793100, SOLCI005177000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107006870, gene-LOC107027410, gene-LOC107028391 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23355_chr05_-, STRG.23356_chr05_- |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G4256, TC01G4257, TC02G0609 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06340.v3.1 |