Basic Information
Locus ID:
nbisL1-mrna-15976
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001425F_pilon | 1638219 | 1641792 | + | nbisL1-mrna-15976 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 78,187.18 Da | 36.12 | 92.06 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 425 | 716 | 8.46294E-90 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 68 | 5.4E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 150 | 172 | 0.19 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 424 | 640 | 8.1E-33 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 289 | 2.45E-48 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 424 | 713 | 1.78E-57 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 496 | 718 | 2.5E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 192 | 1.5E-43 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 398 | 495 | 4.9E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 193 | 294 | 2.7E-24 | IPR032675 |
| SMART | SM00220 | serkin_6 | 423 | 693 | 5.4E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 419 | 716 | 32.315285 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 543 | 555 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 151 | 164 | 2.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 197 | 210 | 2.8E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67510.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_024467188.2 | receptor protein kinase-like protein ZAR1 [Populus trichocarpa] | 0 |
| Q9ZU46 | Receptor protein kinase-like protein ZAR1 OS=Arabidopsis thaliana OX=3702 GN=ZAR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2XTC4 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_018602 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5561, jg6966 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3526 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013884 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g151130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42695, Sbi_jg45319 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26855 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002620 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35039, Sgl40430 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000003844, gene:ENSEOMG00000014741 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0003270, CQ.Regalona.r1.6BG0003160 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30228400 |
| Apiaceae | Apium graveolens | 2 | Ag1G01236, Ag8G02276 |
| Arecaceae | Cocos nucifera | 1 | scaffold003417G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702926 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1015.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G12061 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G67510.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017984m.g.v1.0, Thhalv10018190m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22510.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g044720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1047 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02990 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g21980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.748 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022217, Pov_00033698 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G29686 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.751, AH05.504, BH04.1087, BH05.551, CH04.1270, CH05.633 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0386330, gene-QOZ80_5BG0433490 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0194460.1, HORVU.MOREX.r3.4HG0341800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063891 |
| Poaceae | Oryza coarctata | 4 | Oco21G004790, Oco22G005460, Oco23G004060, Oco24G003610 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g19480.1, LOC_Os11g19490.1, LOC_Os12g13300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G058400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0107750, Pt_Chr0700259, Pt_Chr0700449 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G024170, Chr06G026580, Chr31G004150 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G753300, Tel4E01G119400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG063630, gene_TRIDC2BG067760 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G444000.2, TraesCS2B02G465200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb090350_P001, Zm00001eb411730_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-35900, nbis-gene-43379, nbis-gene-52008 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g17834, Zma_g18702, Zma_g24914 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1336, evm.TU.LG12.388 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15110 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.135 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23219 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-9319, nbisL1-mrna-9320 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14651 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000013l.24 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006574 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6992 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15976 |
| Salicaceae | Populus euphratica | 2 | populus_peu07625, populus_peu21658 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641265 |
| Solanaceae | Solanum chilense | 1 | SOLCI001102500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018536 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19745_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0716 |
| Zosteraceae | Zostera marina | 2 | Zosma03g16620.v3.1, Zosma04g17530.v3.1 |