Basic Information
Locus ID:
nbisL1-mrna-15968
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 8214008 | 8215589 | + | nbisL1-mrna-15968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 42,239.09 Da | 64.03 | 80.80 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 309 | 352 | 1.58694E-16 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 90 | 3.4E-16 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 309 | 352 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 303 | 355 | 3.53E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 275 | 357 | 5.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 310 | 351 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 310 | 352 | 12.828597 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011022503.1 | PREDICTED: RING-H2 finger protein ATL20-like [Populus euphratica] | 0 |
| P0CH02 | Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2IKG7 | RING-H2 finger protein ATL20-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology