HalophFGD

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Basic Information
Locus ID: nbisL1-mrna-15954
Species & Taxonomic ID: Rhizophora mangle & 40031
Genome Assembly: GCA_037832345.1
Description: Pentatricopeptide repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
001425F_pilon 1524941 1526479 + nbisL1-mrna-15954
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.76 58,315.86 Da 35.38 83.97 -0.18
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 373 422 4.1E-11 IPR002885
Pfam PF13041 PPR repeat family 267 316 3.3E-14 IPR002885
Pfam PF12854 PPR repeat 333 363 9.0E-8 IPR002885
Pfam PF12854 PPR repeat 442 473 1.5E-6 IPR002885
Pfam PF01535 PPR repeat 134 162 0.086 IPR002885
Pfam PF13041 PPR repeat family 198 246 3.0E-9 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 228 296 1.2E-17 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 297 365 3.5E-21 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 90 227 5.2E-23 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 366 511 1.2E-29 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 342 374 0.0014 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 270 304 5.7E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 377 411 1.2E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 449 480 1.8E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 202 228 3.4E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 236 267 2.7E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 305 339 4.9E-10 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 133 163 0.0025 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 413 445 0.0024 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 374 408 10.117337 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 410 440 8.582755 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 268 302 11.169622 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 446 480 11.651919 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 338 373 10.457138 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 233 267 12.24383 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 130 164 8.61564 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 199 229 9.29524 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 303 337 12.737088 IPR002885
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G04130.1 Tetratricopeptide repeat (TPR)-like superfamily protein. 0
RefSeq XP_021674113.1 pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Hevea brasiliensis] 0
Swiss-Prot Q9M8W9 Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g04130 PE=2 SV=2 0
TrEMBL A0A2C9UN67 - 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg5752, jg9557
Aizoaceae Mesembryanthemum crystallinum 2 gene_3540, gene_5373
Amaranthaceae Beta vulgaris 1 BVRB_6g151540
Amaranthaceae Salicornia bigelovii 4 Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae Salicornia europaea 2 Seu_jg11218, Seu_jg15074
Amaranthaceae Suaeda aralocaspica 1 GOSA_00002583
Amaranthaceae Suaeda glauca 4 Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ...
gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ...
CQ.Regalona.r1.7AG0010320
Anacardiaceae Pistacia vera 2 pistato.v30228080, pistato.v30236350
Apiaceae Apium graveolens 2 Ag1G01844, Ag5G02278
Arecaceae Cocos nucifera 3 COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae Phoenix dactylifera 2 gene-LOC103718091, gene-LOC103718684
Asparagaceae Asparagus officinalis 2 AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae Flaveria trinervia 2 Ftri15G22017, Ftri9G15803
Brassicaceae Arabidopsis thaliana 2 AT3G04130.1, AT3G22670.1
Brassicaceae Eutrema salsugineum 2 Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae Brassica nigra 4 BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ...
BniB07g032470.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq07G1278
Casuarinaceae Casuarina glauca 1 Cgl07G1351
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g04160
Nitrariaceae Nitraria sibirica 2 evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae Plantago ovata 2 Pov_00021764, Pov_00022238
Plumbaginaceae Limonium bicolor 2 Lb1G00954, Lb1G08048
Poaceae Echinochloa crus-galli 4 BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ...
gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0510080.1.CDS1 ...
HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae Lolium multiflorum 2 gene-QYE76_023481, gene-QYE76_061911
Poaceae Oryza coarctata 3 Oco03G014520, Oco04G014970, Oco06G024280
Poaceae Oryza sativa 1 LOC_Os02g38950.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G083600, gene-BS78_04G186700
Poaceae Sporobolus alterniflorus 4 Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae Thinopyrum elongatum 1 Tel6E01G415700
Poaceae Triticum dicoccoides 4 gene_TRIDC5AG056230, gene_TRIDC5BG060280 ...
gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae Triticum aestivum 6 TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ...
TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae Zea mays 2 Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae Zoysia japonica 1 nbis-gene-23463
Poaceae Zoysia macrostachya 2 Zma_g13832, Zma_g494
Portulacaceae Portulaca oleracea 2 evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae Kandelia candel 2 add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae Kandelia obovata 1 Maker00006512
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae Populus euphratica 5 populus_peu07647, populus_peu21418, populus_peu21419 ...
populus_peu21420, populus_peu21689
Solanaceae Lycium barbarum 2 gene-LOC132609668, gene-LOC132641233
Solanaceae Solanum chilense 2 SOLCI004820900, SOLCI007024500
Solanaceae Solanum pennellii 2 gene-LOC107020744, gene-LOC107031368
Tamaricaceae Reaumuria soongarica 2 STRG.19726_chr07_+, gene_15533
Tamaricaceae Tamarix chinensis 2 TC04G0518, TC09G0412
Zosteraceae Zostera marina 3 Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.