Basic Information
Locus ID:
nbisL1-mrna-1595
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
La protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 4121801 | 4125474 | + | nbisL1-mrna-1595 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 47,651.78 Da | 40.78 | 66.44 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08030 | LA_like_plant | 11 | 112 | 7.44803E-37 | - |
| CDD | cd12291 | RRM1_La | 130 | 202 | 2.94898E-12 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 136 | 190 | 1.9E-7 | IPR000504 |
| Pfam | PF05383 | La domain | 15 | 97 | 2.0E-16 | IPR006630 |
| Pfam | PF08777 | RNA binding motif | 305 | 397 | 4.2E-20 | IPR014886 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 4 | 116 | 1.9E-14 | IPR036390 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 307 | 407 | 2.04E-8 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 121 | 205 | 2.58E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 284 | 396 | 5.5E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 119 | 213 | 1.3E-14 | IPR012677 |
| Gene3D | G3DSA:1.10.10.10 | - | 7 | 118 | 8.2E-22 | IPR036388 |
| SMART | SM00360 | rrm1_1 | 130 | 202 | 6.6E-6 | IPR000504 |
| SMART | SM00715 | la | 9 | 113 | 4.3E-26 | IPR006630 |
| SMART | SM00360 | rrm1_1 | 301 | 367 | 3.6 | IPR000504 |
| ProSiteProfiles | PS50961 | La-type HTH domain profile. | 5 | 122 | 19.036839 | IPR006630 |
| ProSiteProfiles | PS51939 | xRRM domain profile. | 287 | 414 | 21.727392 | IPR014886 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 129 | 214 | 11.468789 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 292 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32720.2 | La protein 1. Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. | 0 |
| RefSeq | XP_021674510.1 | la protein 1-like [Hevea brasiliensis] | 0 |
| Q93ZV7 | La protein 1 OS=Arabidopsis thaliana OX=3702 GN=LA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KLJ5 | La protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23857 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034908 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g031890 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20994, Sbi_jg22787 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16662 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018229 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62463, Sgl67008 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019585, gene:ENSEOMG00000022090 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0016300, CQ.Regalona.r1.2BG0018080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253450 |
| Apiaceae | Apium graveolens | 2 | Ag6G01310, Ag7G01960 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G003630 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698659, gene-LOC103707839 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.425.V1.1, AsparagusV1_04.1498.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G31063 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G79880.1, AT4G32720.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018639m.g.v1.0, Thhalv10025209m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g35890.v2.2, Sp7g30490.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g085960.2N, BniB03g009750.2N, BniB05g005320.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2112 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2308 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g11730, gene.Cymno09g00900 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0100s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g11320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-262 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.779 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013650 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08475 |
| Poaceae | Echinochloa crus-galli | 7 | AH07.2558, AH09.1443, BH07.2368, BH07.2369, BH09.1623 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0137070, gene-QOZ80_2BG0192680 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178560.1 |
| Poaceae | Oryza coarctata | 4 | Oco03G015010, Oco04G015500, Oco07G009730, Oco08G009490 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g39700.1, LOC_Os04g42010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G192300, gene-BS78_06G148400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302240, Pt_Chr0302277 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G016530, Chr13G007860, Chr23G009650, Chr25G010050 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G617200, Tel2E01G617400, Tel6E01G111700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051030, gene_TRIDC2BG054450 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G352500.1, TraesCS2B02G371800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb246770_P001, Zm00001eb420980_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18573, nbis-gene-36988 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16643, Zma_g19986 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2347, evm.TU.LG07.1111 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g25090, gene.Posoc04g13800, gene.Posoc08g05040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.781 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14292, nbisL1-mrna-14293, nbisL1-mrna-28581 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21416 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1595 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.506 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000114 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14398 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19272 |
| Salicaceae | Populus euphratica | 2 | populus_peu04874, populus_peu12777 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635655, gene-LOC132635656 |
| Solanaceae | Solanum chilense | 1 | SOLCI000456600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028966 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32833_chr09_-, STRG.4132_chr03_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1713, TC02G0338 |
| Zosteraceae | Zostera marina | 3 | Zosma01g10510.v3.1, Zosma03g31040.v3.1, Zosma06g13720.v3.1 |