Basic Information
Locus ID:
nbisL1-mrna-15946
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000132F_pilon | 1123109 | 1131909 | + | nbisL1-mrna-15946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 99,165.16 Da | 40.61 | 81.78 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 697 | 877 | 1.11031E-57 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 284 | 876 | 3.9E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 282 | 878 | 7.46E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 277 | 509 | 4.5E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 635 | 881 | 1.8E-56 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 137 | 221 | 1.0E-5 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 284 | 879 | 57.527245 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 823 | 840 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 285 | 300 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_012066368.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067L3C7 | Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas OX=180498 GN=JCGZ_23913 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology