Basic Information
Locus ID:
nbisL1-mrna-15935
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000132F_pilon | 1031104 | 1032327 | - | nbisL1-mrna-15935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 45,663.04 Da | 45.32 | 115.95 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 4.15773E-23 | - |
| Pfam | PF04564 | U-box domain | 6 | 76 | 2.6E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 109 | 380 | 9.49E-19 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 79 | 5.18E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 82 | 5.6E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 96 | 390 | 1.1E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 74 | 4.2E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 81 | 34.093094 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_002513723.3 | E3 ubiquitin-protein ligase PUB23, partial [Ricinus communis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | B9RJ04 | RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_1754100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology