Basic Information
Locus ID:
nbisL1-mrna-15898
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 7545279 | 7550632 | + | nbisL1-mrna-15898 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 100,577.28 Da | 59.94 | 67.73 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 820 | 859 | 1.57542E-17 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 818 | 865 | 1.1E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 807 | 866 | 2.32E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 805 | 868 | 1.8E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 821 | 859 | 10.084539 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 103 | - | - |
| Coils | Coil | Coil | 231 | 258 | - | - |
| Coils | Coil | Coil | 749 | 776 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021658463.1 | uncharacterized protein LOC110648515 isoform X3 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2C9V1P9 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_11G153300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology