Basic Information
Locus ID:
nbisL1-mrna-15897
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 7521648 | 7529574 | - | nbisL1-mrna-15897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 110,262.89 Da | 38.88 | 78.16 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 644 | 684 | 1.00008E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 578 | 628 | 1.7E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 645 | 686 | 2.9E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 392 | 447 | 3.3E-15 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 727 | 784 | 5.96E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 630 | 687 | 8.02E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 631 | 710 | 5.1E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 728 | 789 | 1.4E-8 | IPR013083 |
| SMART | SM00249 | PHD_3 | 731 | 787 | 0.21 | IPR001965 |
| SMART | SM00249 | PHD_3 | 644 | 685 | 1.5E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 642 | 687 | 10.5669 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 645 | 684 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 67 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021674551.1 | uncharacterized protein LOC110660522 [Hevea brasiliensis] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9V1E1 | PHD-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_11G153000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology