Basic Information
Locus ID:
nbisL1-mrna-1588
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 13054892 | 13061134 | - | nbisL1-mrna-1588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 29,518.65 Da | 57.60 | 78.52 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 32 | 100 | 3.51254E-41 | IPR033896 |
| Pfam | PF01486 | K-box region | 117 | 214 | 3.4E-22 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 39 | 86 | 1.4E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 32 | 101 | 3.66E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 43 | 141 | 8.1E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 30 | 89 | 7.3E-39 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 30 | 90 | 31.454609 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 117 | 220 | 12.234528 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 32 | 86 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 32 | 52 | 1.6E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 67 | 88 | 1.6E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 52 | 67 | 1.6E-30 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 257 | - | - |
| Coils | Coil | Coil | 117 | 144 | - | - |
| Coils | Coil | Coil | 186 | 213 | - | - |
| Coils | Coil | Coil | 151 | 174 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_039009626.1 | agamous-like MADS-box protein AGL19 [Hibiscus syriacus] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XR16 | Agamous-like MADS-box protein AGL14 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111463pilonHSYRG00261 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology