Basic Information
Locus ID:
nbisL1-mrna-15867
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 6981249 | 6986495 | - | nbisL1-mrna-15867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 64,530.03 Da | 58.44 | 62.22 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 530 | 573 | 5.06785E-18 | - |
| Pfam | PF13639 | Ring finger domain | 530 | 573 | 2.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 514 | 579 | 6.83E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 495 | 578 | 4.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 531 | 572 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 531 | 573 | 12.769585 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45290.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024445290.2 | uncharacterized protein LOC18094031 isoform X1 [Populus trichocarpa] | 0 |
| Q9H0F5 | E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens OX=9606 GN=RNF38 PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P2JLR2 | RING-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23668, jg36913 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14667 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003531 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g102140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4654, Sbi_jg7416 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12613 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001363 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51768, Sgl57076 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006532, gene:ENSEOMG00000021051 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0009280, CQ.Regalona.r1.5BG0009650 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30021750 |
| Apiaceae | Apium graveolens | 1 | Ag1G01102 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G015800, scaffold026746G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103713011, gene-LOC120108550, gene-LOC120109972 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.40.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G12916 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45290.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000852m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g062330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0697 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0871 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g01890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1482 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.474 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003737 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07665, Lb2G12048 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2616, BH05.2700, CH01.4749 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0374700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0058470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013579 |
| Poaceae | Oryza coarctata | 2 | Oco09G008640, Oco10G008800 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g32350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G131300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505110, Pt_Chr0505451 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G003870, Chr0G027380, Chr12G016240, Chr18G008170 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G403200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG036660, gene_TRIDC1BG041650 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G243200.2, TraesCS1B02G254700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287150_P002, Zm00001eb350790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26786 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.542, evm.TU.LG17.554 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.778 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6431 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012294 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15867 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8981 |
| Salicaceae | Populus euphratica | 2 | populus_peu03332, populus_peu34178 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635489 |
| Solanaceae | Solanum chilense | 1 | SOLCI005067700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026619 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12825 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1656 |
| Zosteraceae | Zostera marina | 1 | Zosma02g05500.v3.1 |