Basic Information
Locus ID:
nbisL1-mrna-15863
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000194F_pilon | 3500215 | 3511871 | + | nbisL1-mrna-15863 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 102,327.82 Da | 42.15 | 79.77 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 770 | 875 | 3.8329E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 216 | 542 | 5.1128E-83 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 769 | 865 | 1.4E-13 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 237 | 619 | 7.1E-67 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 644 | 675 | 4.6E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 643 | 684 | 9.49E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 550 | 922 | 2.92E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 200 | 542 | 5.32E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 411 | 543 | 5.1E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 187 | 279 | 2.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 305 | 398 | 3.8E-9 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 557 | 923 | 7.0E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 647 | 692 | 3.2E-9 | IPR013083 |
| SMART | SM00487 | ultradead3 | 212 | 521 | 1.7E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 782 | 865 | 3.0E-16 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 231 | 504 | 11.36417 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 755 | 918 | 13.337229 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 654 | 663 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 282 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021675592.1 | helicase-like transcription factor CHR28 [Hevea brasiliensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5QLQ8 | Putative ATP-dependent helicase C23E6.02 isoform X 1 OS=Populus alba OX=43335 GN=D5086_0000071630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology