Basic Information
Locus ID:
nbisL1-mrna-15857
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000194F_pilon | 3250387 | 3257414 | + | nbisL1-mrna-15857 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 86,660.56 Da | 49.62 | 82.32 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16927 | HATPase_Hsp90-like | 92 | 260 | 8.69112E-78 | - |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 106 | 238 | 4.9E-10 | IPR003594 |
| Pfam | PF00183 | Hsp90 protein | 242 | 731 | 2.4E-181 | IPR001404 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 82 | 270 | 1.57E-48 | IPR036890 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 314 | 563 | 4.78E-82 | IPR020568 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 585 | 706 | 9.02E-34 | IPR037196 |
| Gene3D | G3DSA:3.40.50.11260 | - | 476 | 562 | 2.8E-31 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 65 | 184 | 2.6E-47 | IPR036890 |
| Gene3D | G3DSA:1.20.120.790 | - | 563 | 710 | 8.2E-53 | IPR037196 |
| Gene3D | G3DSA:3.30.565.10 | - | 185 | 287 | 8.9E-21 | IPR036890 |
| Gene3D | G3DSA:3.30.230.80 | - | 312 | 475 | 1.3E-62 | - |
| PIRSF | PIRSF002583 | HSP90_HTPG | 58 | 189 | 4.5E-51 | IPR001404 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 183 | 748 | 4.6E-154 | IPR001404 |
| ProSitePatterns | PS00298 | Heat shock hsp90 proteins family signature. | 103 | 112 | - | IPR019805 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 83 | 103 | 1.1E-35 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 153 | 170 | 1.1E-35 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 104 | 126 | 1.1E-35 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 171 | 188 | 1.1E-35 | IPR020575 |
| Hamap | MF_00505 | Chaperone protein HtpG [htpG]. | 80 | 707 | 22.626678 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 758 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04030.1 | Chaperone protein htpG family protein. Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. | 0 |
| RefSeq | XP_012080479.1 | heat shock protein 90-5, chloroplastic [Jatropha curcas] | 0 |
| Q9SIF2 | Heat shock protein 90-5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HSP90-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KRL8 | Uncharacterized protein MANES_14G091600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology