Basic Information
Locus ID:
nbisL1-mrna-15850
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 6628344 | 6642393 | - | nbisL1-mrna-15850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 125,464.11 Da | 49.37 | 74.74 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 636 | 692 | 2.55429E-29 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 637 | 691 | 9.1E-10 | IPR023780 |
| Pfam | PF01426 | BAH domain | 393 | 505 | 3.7E-14 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 701 | 1059 | 2.4E-37 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 526 | 1062 | 2.87E-80 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 629 | 697 | 9.53E-13 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 327 | 492 | 1.5E-47 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 529 | 1079 | 1.4E-243 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 855 | 1028 | 1.4E-243 | - |
| SMART | SM00439 | BAH_4 | 391 | 507 | 3.5E-26 | IPR001025 |
| SMART | SM00298 | chromo_7 | 636 | 695 | 1.7E-8 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 705 | 1058 | 4.4E-32 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 637 | 690 | 12.593701 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 391 | 507 | 19.948767 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 527 | 1069 | 47.0966 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 660 | 680 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 707 | 719 | - | IPR018117 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1044 | 1062 | - | IPR031303 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 528 | 544 | 2.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 750 | 764 | 2.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 796 | 809 | 2.4E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 99 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.1 | chromomethylase 2. | 0 |
| RefSeq | XP_021652345.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X3 [Hevea brasiliensis] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2K2B4M4 | Cytosine-specific methyltransferase OS=Populus trichocarpa OX=3694 GN=POPTR_003G100000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology