Basic Information
Locus ID:
nbisL1-mrna-15843
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 6445650 | 6456816 | + | nbisL1-mrna-15843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 80,262.29 Da | 46.66 | 90.79 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 74 | 281 | 5.4409E-125 | - |
| CDD | cd18794 | SF2_C_RecQ | 282 | 418 | 5.11917E-69 | - |
| Pfam | PF00570 | HRDC domain | 606 | 666 | 9.9E-9 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 93 | 261 | 1.9E-20 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 304 | 408 | 1.2E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 421 | 477 | 7.7E-11 | IPR032284 |
| Pfam | PF09382 | RQC domain | 484 | 586 | 2.2E-5 | IPR018982 |
| SUPERFAMILY | SSF47819 | HRDC-like | 607 | 669 | 3.49E-5 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 130 | 425 | 9.83E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 15 | 281 | 1.0E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 482 | 583 | 8.6E-23 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 602 | 669 | 3.2E-12 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 282 | 478 | 4.7E-64 | IPR027417 |
| SMART | SM00956 | RQC_2 | 486 | 583 | 0.0049 | IPR018982 |
| SMART | SM00487 | ultradead3 | 87 | 290 | 6.5E-33 | IPR014001 |
| SMART | SM00490 | helicmild6 | 328 | 409 | 2.0E-26 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 84 | 519 | 2.3E-159 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 99 | 274 | 24.699745 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 299 | 448 | 19.760654 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 597 | 676 | 12.315895 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 706 | - | - |
| Coils | Coil | Coil | 3 | 37 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_011028013.1 | PREDICTED: mediator of RNA polymerase II transcription subunit 34 [Populus euphratica] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AD95 | ATP-dependent DNA helicase OS=Nyssa sinensis OX=561372 GN=F0562_035560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology