Basic Information
Locus ID:
nbisL1-mrna-15839
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000194F_pilon | 2848092 | 2856663 | - | nbisL1-mrna-15839 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 23,514.53 Da | 66.45 | 65.14 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 120 | 161 | 1.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 164 | 1.23E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 174 | 3.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 161 | 2.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 162 | 11.722122 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 100 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38895.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002314992.2 | E3 ubiquitin-protein ligase At3g02290 isoform X2 [Populus trichocarpa] | 0 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 0 | |
| TrEMBL | B9HXG9 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G140300 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.522 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26688 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16300 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15839 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.261 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22341 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23539 |
| Salicaceae | Populus euphratica | 1 | populus_peu20875 |