Basic Information
Locus ID:
nbisL1-mrna-15835
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001425F_pilon | 818317 | 819418 | + | nbisL1-mrna-15835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 37,753.93 Da | 61.64 | 68.53 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 109 | 152 | 4.17813E-19 | - |
| Pfam | PF13639 | Ring finger domain | 109 | 152 | 2.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 89 | 158 | 5.81E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 156 | 3.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 110 | 151 | 2.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 110 | 152 | 12.061441 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 60 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23980.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021635857.1 | - | 0 |
| Q8GW38 | RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067JP67 | RING-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_21795 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology