Basic Information
Locus ID:
nbisL1-mrna-1582
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 6842539 | 6844876 | + | nbisL1-mrna-1582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 30,365.15 Da | 49.18 | 106.10 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 49 | 101 | 6.9E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 107 | 2.37E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 141 | 9.5E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 104 | 9.907503 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 68 | 77 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021592763.1 | uncharacterized protein LOC110600263 [Manihot esculenta] | 0 |
| TrEMBL | A0A2C9UJZ0 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G083000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology