Basic Information
Locus ID:
nbisL1-mrna-15793
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001425F_pilon | 491466 | 496531 | - | nbisL1-mrna-15793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 58,642.63 Da | 55.87 | 80.19 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 222 | 363 | 8.7E-72 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 144 | 5.5E-61 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 7 | 149 | 1.18E-19 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 227 | 367 | 1.16E-24 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 230 | 349 | 4.5E-17 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 5 | 143 | 3.7E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 421 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_012091969.2 | - | 0 |
| TrEMBL | A0A2P2JPF3 | DUF569 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology