Basic Information
Locus ID:
nbisL1-mrna-1579
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 15993475 | 15999993 | - | nbisL1-mrna-1579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 118,301.31 Da | 48.37 | 83.01 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 834 | 873 | 7.87706E-13 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 458 | 701 | 4.54787E-97 | - |
| CDD | cd18793 | SF2_C_SNF | 902 | 999 | 2.6629E-36 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 908 | 1010 | 6.5E-12 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 490 | 780 | 3.4E-67 | IPR000330 |
| Pfam | PF08797 | HIRAN domain | 244 | 335 | 4.1E-14 | IPR014905 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 831 | 879 | 2.8E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 444 | 701 | 9.54E-51 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 822 | 879 | 8.84E-14 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 714 | 1026 | 2.25E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 717 | 1000 | 4.3E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 427 | 712 | 4.5E-54 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 796 | 897 | 2.7E-14 | IPR013083 |
| SMART | SM00490 | helicmild6 | 935 | 1016 | 3.3E-6 | IPR001650 |
| SMART | SM00910 | HIRAN_2 | 243 | 339 | 4.3E-10 | IPR014905 |
| SMART | SM00487 | ultradead3 | 454 | 680 | 7.8E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 834 | 873 | 2.1E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 834 | 874 | 12.518784 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 904 | 1038 | 11.679089 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 490 | 663 | 16.721035 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 849 | 858 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 163 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43530.1 | Helicase protein with RING/U-box domain. | 0 |
| RefSeq | XP_021644792.1 | DNA repair protein RAD5B [Hevea brasiliensis] | 0 |
| Q9FIY7 | DNA repair protein RAD5B OS=Arabidopsis thaliana OX=3702 GN=RAD5B PE=3 SV=1 | 0 | |
| TrEMBL | A0A2C9UCI9 | DNA repair protein RAD5B OS=Manihot esculenta OX=3983 GN=MANES_15G038300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12680, jg37578 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26046 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011488 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g027880, BVRB_9g210900 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11904, Sbi_jg29552, Sbi_jg46848, Sbi_jg46849 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21145 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009472 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl80320, Sgl80324, Sgl82779, Sgl82787 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017001, gene:ENSEOMG00000039893 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0010630, CQ.Regalona.r1.9BG0011800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30057260 |
| Apiaceae | Apium graveolens | 2 | Ag11G04353, Ag8G01493 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G009490, COCNU_07G010310 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103723832, gene-LOC120103925 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1582.V1.1, AsparagusV1_04.1812.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri2G27081, Ftri7G30610 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G22750.1, AT5G43530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012547m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g22670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g060930.2N, BniB08g011360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1716 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1718 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno08g08900, gene.Cymno10g09730 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g16530, gene.Thate08g15910 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.773 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015868, Pov_00025474 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G10487, Lb3G19588, Lb3G19592, Lb3G19593 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.2015, AH09.343, BH07.1980, BH09.417, CH07.1835 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0132610, gene-QOZ80_2BG0188000 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0103780.1, HORVU.MOREX.r3.6HG0559070.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022658, gene-QYE76_032802 |
| Poaceae | Oryza coarctata | 3 | Oco03G011410, Oco04G011820, Oco08G001430 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G149100, gene-BS78_06G039700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0200888, Pt_Chr0402389, Pt_Chr0402391 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G010750, Chr09G015400, Chr13G011320, Chr15G012340 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G161800, Tel2E01G482200, Tel2E01G482400 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG008140, gene_TRIDC2BG009670 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G072700.1, TraesCS2B02G086700.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb176980_P001, Zm00001eb181290_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20844, nbis-gene-32198 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13607, Zma_g20980 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1570, evm.TU.LG15.1558 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g23090, gene.Posoc06g09790 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_13_RagTag.450, evm.TU.Scaffold_3_RagTag.1255 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1579, nbisL1-mrna-30673 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3072 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-22079, nbisL1-mrna-2512 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.255 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015843 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-4142, nbisL1-mrna-6225, nbisL1-mrna-6226 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1952, nbisL1-mrna-22181 |
| Salicaceae | Populus euphratica | 3 | populus_peu08553, populus_peu21518, populus_peu33950 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600517, gene-LOC132617999 |
| Solanaceae | Solanum chilense | 1 | SOLCI004834700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002900, gene-LOC107012600 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_4212, gene_9526 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1862 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30940.v3.1 |