Basic Information
Locus ID:
nbisL1-mrna-15784
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000194F_pilon | 2265009 | 2265812 | - | nbisL1-mrna-15784 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 18,065.47 Da | 25.20 | 97.91 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 89 | 159 | 6.5966E-32 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 88 | 157 | 3.4E-29 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 89 | 159 | 5.65E-26 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 16 | 57 | 3.46E-12 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 10 | 59 | 9.0E-23 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 89 | 162 | 4.6E-35 | - |
| SMART | SM01376 | eIF_5a_2 | 88 | 157 | 3.9E-34 | IPR020189 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 79 | 160 | 8.4E-23 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 13 | 61 | 1.6E-20 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 25 | 32 | - | IPR019769 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_052183579.1 | eukaryotic translation initiation factor 5A-2 [Diospyros lotus] | 0 |
| P24922 | Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S0RA63 | Eukaryotic translation initiation factor 5A-2 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A030089 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology