Basic Information
Locus ID:
nbisL1-mrna-15782
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
WRKY20
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000194F_pilon | 2240545 | 2244185 | - | nbisL1-mrna-15782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 58,858.92 Da | 54.20 | 57.00 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 266 | 320 | 1.4E-22 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 425 | 482 | 3.3E-24 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 263 | 322 | 7.72E-24 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 416 | 484 | 1.83E-28 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 249 | 323 | 5.0E-25 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 409 | 485 | 1.3E-34 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 424 | 483 | 1.9E-37 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 263 | 321 | 5.4E-31 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 258 | 322 | 21.872543 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 419 | 484 | 37.217827 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 354 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_021613186.1 | probable WRKY transcription factor 3 [Manihot esculenta] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9VWJ7 | WRKY transcription factor 3 OS=Manihot esculenta OX=3983 GN=MANES_05G106900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology